Your JobID is: Sample
Your Job Description is: This is a Sample Output!
Your input MSA is PF00085.fasta
Your Reference Sequence is THIO_ECOLI/4-107
Your PDB file is 2trx.pdb
Your MSA has 16143 sequences in 4651 clusters at 62% identity
Results with more than 400 sequence clusters show good predictive performance. More information here
MI Circo is a sequential circular representation of the MSA and the information it contains. Colored square boxes of the second circle indicate the MSA position conservation (highly conserverd positions are in red, while less conserved ones are in blue).
Lines connect pairs of positions with MI greater than 6.5 (Marino Buslje et al, 2009). Red edges represent the top 5%, black ones are between 70% and 95%, and gray edges account for the remaining 70%.
More information can be found here
Network files are generated using Cytoscape. Each node represents a site from the MSA. Node color represents site conservation, red is for very conserved sites while blue is for less conserved sites.
| |
Mutual Information Network | Distance Network |
This is an interactive network view using CytoscapeWeb. Select a network and click on the button below
Structural
Bioinformatics Unit
